#!/bin/bash # This script will install git and conda (if not found on the PATH variable) # using micromamba (an 8mb static-linked single-file binary, conda replacement). # For users who already have git and conda, this step will be skipped. # This enables a user to install this project without manually installing conda and git. OS_NAME=$(uname -s) case "${OS_NAME}" in Linux*) OS_NAME="linux";; Darwin*) OS_NAME="osx";; *) echo "Unknown OS: $OS_NAME! This script runs only on Linux or Mac" && exit esac OS_ARCH=$(uname -m) case "${OS_ARCH}" in x86_64*) OS_ARCH="64";; arm64*) OS_ARCH="arm64";; *) echo "Unknown system architecture: $OS_ARCH! This script runs only on x86_64 or arm64" && exit esac # https://mamba.readthedocs.io/en/latest/installation.html if [ "$OS_NAME" == "linux" ] && [ "$OS_ARCH" == "arm64" ]; then OS_ARCH="aarch64"; fi # config export MAMBA_ROOT_PREFIX="$(pwd)/installer_files/mamba" INSTALL_ENV_DIR="$(pwd)/installer_files/env" MICROMAMBA_DOWNLOAD_URL="https://micro.mamba.pm/api/micromamba/${OS_NAME}-${OS_ARCH}/latest" # figure out whether git and conda needs to be installed if [ -e "$INSTALL_ENV_DIR" ]; then export PATH="$INSTALL_ENV_DIR/bin:$PATH"; fi PACKAGES_TO_INSTALL="" if [ ! -e "$INSTALL_ENV_DIR/etc/profile.d/conda.sh" ]; then PACKAGES_TO_INSTALL="$PACKAGES_TO_INSTALL conda"; fi if ! hash "git" &>/dev/null; then PACKAGES_TO_INSTALL="$PACKAGES_TO_INSTALL git"; fi # (if necessary) install git and conda into a contained environment if [ "$PACKAGES_TO_INSTALL" != "" ]; then # download micromamba if [ ! -e "$MAMBA_ROOT_PREFIX/micromamba" ]; then echo "Downloading micromamba from $MICROMAMBA_DOWNLOAD_URL to $MAMBA_ROOT_PREFIX/micromamba" mkdir -p "$MAMBA_ROOT_PREFIX" curl -L "$MICROMAMBA_DOWNLOAD_URL" | tar -xvj "$MAMBA_ROOT_PREFIX/micromamba" chmod u+x "$MAMBA_ROOT_PREFIX/micromamba" # test the mamba binary echo "Micromamba version:" "$MAMBA_ROOT_PREFIX/micromamba" --version fi # create the installer env if [ ! -e "$INSTALL_ENV_DIR" ]; then "$MAMBA_ROOT_PREFIX/micromamba" create -y --prefix "$INSTALL_ENV_DIR" fi echo "Packages to install:$PACKAGES_TO_INSTALL" "$MAMBA_ROOT_PREFIX/micromamba" install -y --prefix "$INSTALL_ENV_DIR" -c conda-forge $PACKAGES_TO_INSTALL if [ ! -e "$INSTALL_ENV_DIR" ]; then echo "There was a problem while installing$PACKAGES_TO_INSTALL using micromamba. Cannot continue." exit fi fi