This change fixes the setting of $PATH for pyenv and its shims, while warning
the user about non-interactive shells.
Co-authored-by: Marc Cornellà <hello@mcornella.com>
Without this fix the confirmation prompt appears wherever the cursor is,
which means that it might appear in the command line when using a widget
that changes the directory without redrawing the prompt (an example of
this are the dircycle and dirhistory plugins).
Changed commands:
gcd: uses gitflow.branch.develop to get user-set development branch
gch: uses gitflow.prefix.hotfix to get user-set hotfix prefix
gcr: uses gitflow.prefix.release to get user-set release prefix
Co-authored-by: Fabio 'c0m3tx' Vitale <c0m3tx@gmail.com>
I thought it would be useful to add these aliases.
There are already aliases for `git commit -S` and `git commit -s` but there is none for both simultaneously =)
* Add first impl of samtools autocompletion
* Just autocomplete with files all the time
* Add init impl of bedtools completion
* Add readme.md for bedtools plugin
* Add readme for samtools
Co-authored-by: Rolf Schroeder <rolf.schroeder@centogene.com>
* Switch order of "apt" and "aptitude" for detection
"apt" is installed by default at Debian (maybe Ubuntu too), while "aptitude" does not seem to be installed by default.
For that, it may be better for most of the users to prefer "aptitude" if installed.
* plugins/debian/README: Change of order mirroded into documentation
* Test only for the presence of a .git directory in virtualenvwrapper
Instead of using both $(git rev-parse --show-toplevel) and a check for
a .git directory, use just the latter. As well as being redundant
the former does not work quite so well when using multiple worktrees;
each worktree will be treated as a separate project.
* Unset ENV_NAME & deactivate if no virtualenv found
This addresses #4603 without breaking current behaviour (where current
behaviour is correct).
When changing directories, if there is no environment matching
ENV_NAME, ENV_NAME is emptied and deactivate called if there is a
current environment active (based on CD_VIRTUAL_ENV).
* Use path comparison not string comparison for paths
This will solve part of issue #4255 where WORKON_HOME is defined with a
trailing slash or not normalised in some way, as well as instances
where symlinks are used, and any other instances where constructed
paths don't exactly match even though they go to the same file.
Co-authored-by: Robby Russell <robby@planetargon.com>
* `rdmd` is aliased to `rake db:migrate:down`
* `rdmu` is aliased to `rake db:migrate:up`
* These tasks allow you to run a specific migration up or down by
specifying the appropriate `VERSION` env variable, which contains
the numerical prefix of the migration's filename
* ssh-agent: lock this script with a mkdir style mutex
This script is a kind of singleton pattern and is not reentrant.
If several shells are oppened in a fast sequence, then several
independent ssh-agents would be created, which is not acceptable.
A mutex is required.
Signed-off-by: Nuno Goncalves <nunojpg@gmail.com>
* ssh-agent: only start agent if .ssh dir exists
To use the same profile system-wide, it might happen
that the .ssh directory does not exist
(typically $HOME/.ssh/). This would trigger a error.
Creating the directory would be a option, but it
usually will not make sense to do so because it means
the user doesn't have ssh keys or config.
Signed-off-by: Nuno Goncalves <nunojpg@gmail.com>
* ssh-agent: adds lazy option to disable key loading on start
Option is documented on updated README.md
Signed-off-by: Nuno Goncalves <nunojpg@gmail.com>
* ssh-agent: simplify agent-forwarding checking
Signed-off-by: Nuno Goncalves <nunojpg@gmail.com>
Co-authored-by: Robby Russell <robby@planetargon.com>
